Gap Terms

Fine-grained chromatin compartments (A1, A2, B1, B2, B3, B4) within major A/B compartments.

Phenotypic signal associated with CRISPR perturbations.

Nucleotide contribution scores from a deep neural network trained on MPRA data.

Genomic regions selected for bias-corrected signal profile interpretation.

Genomic regions selected for predicted bias profile interpretation.

Genomic regions selected for combined signal and contribution score analysis.

Genomic regions selected for profile contribution score analysis.

Genomic regions designated for model training and held-out evaluation.

Signal strength of element-gene interaction associations.

Peaks ranked by IDR score, with lower IDR indicating higher reproducibility across replicates.

Quantifications across various genic features (exons, introns, UTRs).

Reference phastCons conservation scores across the genome.

Control signal profile.

Cell-level participation scores in latent topics from topic modeling.

Genomic blacklist regions excluded due to mapping artifacts or technical issues.

Raw ionic current signal from nanopore sequencing.

Genomic regions used as negative controls in experiments.

Genomic regions used as positive controls in experiments.