| 3D structure structure | exactMatch | edam:data_0883 | From LinkML schema |
| alignments alignment | exactMatch | edam:data_0863 | From LinkML schema |
| alignments with modifications alignment | broadMatch | edam:data_0863 Sequence alignment | EDAM lacks modification-aware alignment concept |
| allele-specific variants variant | exactMatch | edam:data_0918 | From LinkML schema |
| bidirectional peaks peak_set | exactMatch | edam:data_3002 | From LinkML schema |
| candidate enhancers regulatory_element | broadMatch | edam:data_3002 Annotation track | EDAM lacks enhancer data type |
| candidate promoters regulatory_element | broadMatch | edam:data_3002 Annotation track | EDAM lacks promoter data type |
| chromosome sizes reference | exactMatch | edam:data_0919 | From LinkML schema |
| chromosomes reference reference | exactMatch | edam:data_2977 | From LinkML schema |
| conservative IDR thresholded peaks peak_set | exactMatch | edam:data_3002 | From LinkML schema |
| contact matrix contact_matrix | broadMatch | edam:topic_3940 Chromosome conformation capture | EDAM has topic; lacks contact matrix data type |
| contigs structure | exactMatch | edam:data_0925 | From LinkML schema |
| curated binding sites regulatory_element | exactMatch | edam:data_3125 | From LinkML schema |
| curated SNVs variant | exactMatch | edam:data_0918 | From LinkML schema |
| differential expression quantifications quantification | exactMatch | edam:data_0928 | From LinkML schema |
| differential splicing quantifications quantification | exactMatch | edam:data_0928 | From LinkML schema |
| diploid personal genome alignments alignment | broadMatch | edam:data_0863 Sequence alignment | EDAM lacks diploid/personal alignment concept |
| distal peaks peak_set | exactMatch | edam:data_3002 | From LinkML schema |
| divergent peaks peak_set | exactMatch | edam:data_3002 | From LinkML schema |
| dsQTLs variant | exactMatch | edam:data_1860 | From LinkML schema |
| eQTLs variant | exactMatch | edam:data_1860 | From LinkML schema |
| exon quantifications quantification | exactMatch | edam:data_0928 | From LinkML schema |
| fine-mapped variants variant | exactMatch | edam:data_0918 | From LinkML schema |
| gene quantifications quantification | exactMatch | edam:data_0928 | From LinkML schema |
| gene stabilities quantification | exactMatch | edam:data_0928 | From LinkML schema |
| genic features quantifications quantification | exactMatch | edam:data_0928 | From LinkML schema |
| genic regions quantifications quantification | exactMatch | edam:data_0928 | From LinkML schema |
| genome index reference | exactMatch | edam:data_3210 | From LinkML schema |
| genome reference reference | exactMatch | edam:data_2977 | From LinkML schema |
| IDR ranked peaks peak_set | exactMatch | edam:data_3002 | From LinkML schema |
| indels variant | exactMatch | edam:data_0918 | From LinkML schema |
| maternal variant calls variant | exactMatch | edam:data_0918 | From LinkML schema |
| merged transcription segment quantifications quantification | exactMatch | edam:data_0928 | From LinkML schema |
| methylation state at CHG dna_methylation | broadMatch | edam:topic_3295 Epigenetics | EDAM has topic; lacks CHG methylation data type |
| methylation state at CHH dna_methylation | broadMatch | edam:topic_3295 Epigenetics | EDAM has topic; lacks CHH methylation data type |
| methylation state at CpG dna_methylation | broadMatch | edam:topic_3295 Epigenetics | EDAM has topic; lacks CpG methylation data type |
| microRNA quantifications quantification | exactMatch | edam:data_0928 | From LinkML schema |
| mitochondrial genome index reference | exactMatch | edam:data_3210 | From LinkML schema |
| mitochondrial genome reference reference | exactMatch | edam:data_2977 | From LinkML schema |
| motif clusters reference reference | exactMatch | edam:data_1353 | From LinkML schema |
| motif model deep_learning | exactMatch | edam:data_0859 | From LinkML schema |
| mRNA stabilities quantification | exactMatch | edam:data_0928 | From LinkML schema |
| novel peptides quantification | exactMatch | edam:data_0945 | From LinkML schema |
| optimal IDR thresholded peaks peak_set | exactMatch | edam:data_3002 | From LinkML schema |
| paternal variant calls variant | exactMatch | edam:data_0918 | From LinkML schema |
| peaks peak_set | exactMatch | edam:data_3002 | From LinkML schema |
| peaks and background as input for IDR peak_set | exactMatch | edam:data_3002 | From LinkML schema |
| peptide quantifications quantification | exactMatch | edam:data_0945 | From LinkML schema |
| personalized genome assembly structure | exactMatch | edam:data_0925 | From LinkML schema |
| preprocessed alignments alignment | broadMatch | edam:data_0863 Sequence alignment | EDAM lacks preprocessing stage qualifier |
| protein expression quantifications quantification | exactMatch | edam:data_2603 | From LinkML schema |
| proximal peaks peak_set | exactMatch | edam:data_3002 | From LinkML schema |
| pseudoreplicated IDR thresholded peaks peak_set | exactMatch | edam:data_3002 | From LinkML schema |
| pseudoreplicated peaks peak_set | exactMatch | edam:data_3002 | From LinkML schema |
| PWMs sequence_motif | exactMatch | edam:data_1362 | From LinkML schema |
| reads alignment | exactMatch | edam:data_0924 | From LinkML schema |
| reference variants variant | exactMatch | edam:data_0918 | From LinkML schema |
| regulatory elements regulatory_element | broadMatch | edam:data_3002 Annotation track | EDAM lacks regulatory element data type |
| replicated peaks peak_set | exactMatch | edam:data_3002 | From LinkML schema |
| representative DNase hypersensitivity sites peak_set | exactMatch | edam:data_3002 | From LinkML schema |
| representative IDR thresholded peaks peak_set | exactMatch | edam:data_3002 | From LinkML schema |
| restriction enzyme site locations annotation | exactMatch | edam:data_3125 | From LinkML schema |
| scaled RNA stability quantification | exactMatch | edam:data_0928 | From LinkML schema |
| sequence motifs sequence_motif | exactMatch | edam:data_1353 | From LinkML schema |
| sequence motifs instances sequence_motif | exactMatch | edam:data_1353 | From LinkML schema |
| sequence motifs report sequence_motif | exactMatch | edam:data_2762 | From LinkML schema |
| signal p-value signal_track | exactMatch | edam:data_0951 | From LinkML schema |
| SNPs variant | exactMatch | edam:data_0918 | From LinkML schema |
| sparse gene count matrix count_matrix | exactMatch | edam:data_3917 | From LinkML schema |
| sparse gRNA count matrix crispr_screen | exactMatch | edam:data_3917 | From LinkML schema |
| sparse peak count matrix count_matrix | exactMatch | edam:data_3917 | From LinkML schema |
| sparse splice junction count matrix count_matrix | exactMatch | edam:data_3917 | From LinkML schema |
| sparse transcript count matrix count_matrix | exactMatch | edam:data_3917 | From LinkML schema |
| splice junctions annotation | broadMatch | edam:topic_3320 RNA splicing | EDAM has topic only; no splice junction data type |
| transcribed region quantifications quantification | exactMatch | edam:data_0928 | From LinkML schema |
| transcript quantifications quantification | exactMatch | edam:data_0928 | From LinkML schema |
| transcription segment quantifications quantification | exactMatch | edam:data_0928 | From LinkML schema |
| transcription start sites regulatory_element | broadMatch | edam:data_3002 Annotation track | EDAM lacks TSS data type |
| transcriptome alignments alignment | broadMatch | edam:data_0863 Sequence alignment | EDAM lacks transcriptome-specific alignment |
| transcriptome index reference | exactMatch | edam:data_3210 | From LinkML schema |
| transcriptome reference reference | exactMatch | edam:data_2977 | From LinkML schema |
| unidirectional peaks peak_set | exactMatch | edam:data_3002 | From LinkML schema |
| UV enriched segment quantifications quantification | exactMatch | edam:data_0928 | From LinkML schema |
| variant calls variant | exactMatch | edam:data_0918 | From LinkML schema |
| variant effect quantifications variant | exactMatch | edam:data_0918 | From LinkML schema |
| variant functional prediction variant | exactMatch | edam:data_0918 | From LinkML schema |