Facet vocabulary
Normalization
3 terms
Controlled vocabulary distinguishing the scaling normalization applied to a
signal (raw vs depth-normalized vs percentage-normalized). A small
facet vocabulary that factors the scaling qualifier out of
compound ENCODE
output_type / DataType terms
(e.g. "raw signal", "normalized signal", "percentage normalized signal").
A provenance facet: it records the scaling operation
applied to produce the values, not what the values mean. An absent value
means unspecified — not raw (the generic
signal term carries no
normalization value). This axis covers only scaling; it does
not cover statistic transforms (p-value, fold-change,
z-score, enrichment) or smoothing, which change what the values mean and
remain distinct output_types. Surfaced via the
Track Provenance
schema's normalization slot.
Aligned with FGA-WG issue #2 (data interpretation).
raw
Unprocessed signal before any normalization.
depth_normalized
Normalized by sequencing depth / library size — the generic "normalized" case.
percentage_normalized
Expressed as a percentage of total signal.